PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00034387-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HSF
Protein Properties Length: 227aa    MW: 25410.7 Da    PI: 9.8465
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00034387-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.91.6e-33191112103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+y++++d+ +++++sw +++nsfvv+ ++ef+ ++Lp+yF h+nf+SFvRQLn+YgF+k+ + +          eF+++ Fkkg+k+ll
  PSME_00034387-RA  19 FLVKTYRLVDDPCTDHIVSWGDHKNSFVVWRPKEFSASLLPTYFNHNNFSSFVRQLNTYGFRKIVRGR---------CEFANELFKKGQKHLL 102
                       9***************************************************************9988.........67************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i+r+k +
  PSME_00034387-RA 103 CQIQRRKPS 111
                       ******975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.1E-5315108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.0E-3717108IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.2E-3117108IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.9E-181942IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-3019108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-185769IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-187082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGGTSGSARD AGRLVAAPFL VKTYRLVDDP CTDHIVSWGD HKNSFVVWRP KEFSASLLPT  60
YFNHNNFSSF VRQLNTYGFR KIVRGRCEFA NELFKKGQKH LLCQIQRRKP STASISTTTQ  120
DNDKSSSLFR NTSSTVQDLD VPAAAPSLSE LNEILRRNNS LLSSEIARLQ SICKRNVTRF  180
TPHNTSNPLL INMERSKIDN PSSCSSITDV AEENNMNPPK LFGVPLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-211910829129Heat shock factor protein 1
5d5v_B2e-211910829129Heat shock factor protein 1
5d5v_D2e-211910829129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931521.12e-56PREDICTED: heat stress transcription factor B-4b-like
SwissprotQ9C6352e-54HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLH9WUJ33e-73H9WUJ3_PINTA; Uncharacterized protein (Fragment)
STRINGSolyc11g064990.1.11e-55(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-55heat shock transcription factor B4